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Orthomyxoviridae 
Influenza virus A 
Influenza virus B 
V Influenza virus C ictor Abdu 
Group 10b 
GM 3
I had a little bird 
Its name was Enza 
I opened the window 
And In-flu-enza 
1889–1890 Asiatic or Russian Flu 
1 million deaths 
1918-1920 Spanish flu 
20 to 100 million 
1957–1958 Asian Flu 
1 to 1.5 million 
1968–1969 Hong Kong flu 
0.75 to 1 million 
1977-1978 Russian flu 
2009-2010 Flu Pandemic 
18,000
Outline 
Characteristics 
Pathogenesis 
Transmission 
Replication 
Symptoms 
Epidemiology 
Diagnosis , Diagnosis and Treatment
Orthomyxoviridae 
 The Orthomyxoviridae are a family of RNA 
viruses that includes five genera: 
Influenzavirus A, Influenzavirus B, 
Influenzavirus C, Isavirus and Thogotovirus. 
 The Influenzaviruses cause influenza in 
vertebrates, including birds , humans, and 
other mammals. 
 Isaviruses infect salmon; thogotoviruses 
infect vertebrates and invertebrates, such 
as mosquitoes and sea lice.
Characteristics 
Characteristics 
RNA virus (negative-sense) 
Pleomorphic virus 
Spheric or tubular shape 
80-120 nm
Characteristics
Structure 
Characteristics 
Envelope : 
2 glycoproteins – hemagglutinin (HA) 
neuraminidase (NA) 
Membrane protein M2 
Matrix protein M1 
A + B viruses – 8 different hellical 
nucleocaspid segments of RNA 
C – 7 genomic segments
Characteristics
Ag Shifts 
Characteristics 
 The HA and NA of influenza A virus can undergo 
major and minor Ag changes to ensure the presence 
of immunologically naïve , susceptible people. 
 Shifts occur only with influenza A virus , and the 
different HAs are designated H1, H2…H16. 
 The NA of influenza A also undergoes antigenic shifts. 
 Mutation-derived changes in HA are responsible for 
the changes in antigenicity (shifts). 
 Influenza B virus undergoes only minor antigenic 
changes . 
 This process occurs every 2 to 3 years causing local 
outbreaks of influenza A and B infection.
Pathogenesis 
Pathogenesis 
Transmission 
Replication 
Mechanism of disease
Transmission 
Pathogenesis 
 Transmission mainly person to person by 
sneezing , coughing , or simply talking . 
 Virus likes a cool , less humid atmosphere ( 
winter heating season ). 
 Extensively spread by school children . 
 The respiratory tract is the gate opening of 
the virus . 
 Influenza can also be transmitted by 
saliva, nasal secretions, feces and blood.
Easily Transmited 
Harder to fight
Replication 
Pathogenesis 
 Begins with the binding of HA to 
sialic acid on cell surface 
glycoproteins . 
 The virus is then transferred to an 
endosome through vesicles . 
 The nucleocapsid travels to the 
nucleus , where it is transcribed into 
messenger RNA. 
 The transcriptase uses host cell 
mRNA as a primer for viral mRNA 
synthesis
Replication 
 The mRNAs are translated into protein in the 
cytoplasm. 
 The HA and NA glycoproteins are processed 
by the endoplasmic reticulum and Golgi 
apparatus. 
 The HA and NA are then transported to the 
cell surface. 
 The virus buds selectively from the apical 
(airway) surface of the cell as a result of the 
preferential insertion of the HA in this 
membrane. 
 Virus is released approximately 8 hours after 
infection. 
Pathogenesis
Replication 
Pathogenesis
Pathogenesis 
The important Products of 
Influenza Gene Segments 
Segment Protein Function 
4 HA Hemagglutinin, viral attachment protein, fusion protein, 
target of neutralizing antibody 
5 NP Nucleocapsid 
6 NA Neuraminidase (cleaves sialic acid and promotes virus 
release) 
7 M1 Matrix protein: viral structural protein (interacts with 
nucleocapsid and envelope, promotes assembly) 
M2 Membrane protein (forms membrane channel and target for 
amantadine, facilitates uncoating and HA production)
Pathogenesis 
Pathogenesis 
 Incubation period : 1-4 days ( average of 2 days ) . 
 Adults can be infectious from 1 day before start of 
symptoms to 5-7 days after illness starts . 
 More infectious in children . 
 The main cause of hospitalization is flu . 
 The symptoms and time course of the disease are 
determined by the extent of viral and immune killing of 
epithelial tissue and cytokine action . 
 Influenza is normally a self-limited disease that rarely 
involves organs other than the lung . 
 Repair of the compromised tissue is initiated within 3 to 5 
days of the start of symptoms but may take as long as a 
month or more , especially in elderly people .
Pathogenesis
Pathogenesis 
Pathogenesis 
 Influenza initially establishes a local upper respiratory 
tract infection . To do so, the virus first targets and kills 
mucus-secreting, ciliated, and other epithelial cells, 
causing the loss of this primary defense system. NA 
facilitates the development of the infection by 
cleaving sialic acid (neuraminic acid) residues of the 
mucus, thereby providing access to tissue. 
 Preferential release of the virus at the apical surface 
of epithelial cells and into the lung promotes cell-to-cell 
spread and transmission to other hosts. If the virus 
spreads to the lower respiratory tract, the infection 
can cause severe desquamation (shedding) of 
bronchial or alveolar epithelium down to a single-cell 
basal layer or to the basement membrane.
Pathogenesis 
Pathogenesis (what else does influenza harm) 
 Influenza infection promotes bacterial adhesion to 
the epithelial cells . 
 Pneumonia may result from a viral pathogenesis or 
from a secondary bacterial infection . 
 Inflammatory cell response of the mucosal 
membrane (monocytes, lymphocytes and few 
neutrophils ) . 
 Submucosal edema . 
 Hyaline membrane disease . 
 Alveolar emphysema . 
 Necrosis of alveolar walls .
Pathogenesis and immunology 
 Interferon and cytokine responses may be 
sufficient to control the infection and are 
responsible for the systemic “flulike” 
symptoms. 
 T-cell responses are important for effecting 
recovery and immunopathogenesis , but Ab 
including vaccine induced Ab , can prevent 
disease . 
 Influenza infection depresses macrophage 
and T-cell function . 
Pathogenesis
Pathogenesis
Symptoms 
F Fever 
A Aches 
C Chills 
T Tiredness 
S Sudden Onset
A brief prodrome of malaise and headache lasting a few hours 
Onset fever , chills , severe myalgias , loss of apetite , weakness and fatigue 
, sore throat , nonproductive cough . 
Recovery within 7 to 10 days Pneumonia , myositis , and Rye syndrome .
Epidemiology 
Nov-April 
All year 
April-Nov 
Epidemiology 
Influenza Seasonal Risk Areas
Epidemiology 
Epidemiology 
 Typically, in a year's normal two flu 
seasons (one per hemisphere), there are 
between three and five million cases of 
severe illness and around 500,000 deaths 
worldwide. 
 Roughly three times per century, a 
pandemic occurs, which infects a large 
proportion of the world's population and 
can kill tens of millions of people .
Diagnosis 
Diagnosis ,Prevention and 
Treatment 
 Based on the characteristic symptoms. 
 The season , presence of the virus in 
community . 
 Cell culture in monkey kidney . 
 Hemagglutination . 
 Ab inhibition of hemadsorption .
Prevention 
Vaccine : 
Diagnosis ,Prevention and 
Treatment 
 A shot containing killed virus ( inactivated ) 
given in the arm normally . 
 Can be also given as nasal spray . 
Other : 
 Keeping good hygiene habits 
 Covering coughs and sneezes 
 Staying away of sick people
Treatment 
Diagnosis ,Prevention and 
Treatment 
 Acetaminophen , antihistamines and 
other drugs are used to relieve the 
symptoms . 
 Amantadine and rimantadine inhibit an 
uncoating step of influenza A virus but do 
not affect the influenza B and C viruses . 
 Zanamivir and oseltamivir inhibit both A 
and B as enzyme inhibitor of 
neuraminidase .
Thank you for your attention

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Orthomyxoviridae (2)

  • 1. Orthomyxoviridae Influenza virus A Influenza virus B V Influenza virus C ictor Abdu Group 10b GM 3
  • 2. I had a little bird Its name was Enza I opened the window And In-flu-enza 1889–1890 Asiatic or Russian Flu 1 million deaths 1918-1920 Spanish flu 20 to 100 million 1957–1958 Asian Flu 1 to 1.5 million 1968–1969 Hong Kong flu 0.75 to 1 million 1977-1978 Russian flu 2009-2010 Flu Pandemic 18,000
  • 3. Outline Characteristics Pathogenesis Transmission Replication Symptoms Epidemiology Diagnosis , Diagnosis and Treatment
  • 4. Orthomyxoviridae  The Orthomyxoviridae are a family of RNA viruses that includes five genera: Influenzavirus A, Influenzavirus B, Influenzavirus C, Isavirus and Thogotovirus.  The Influenzaviruses cause influenza in vertebrates, including birds , humans, and other mammals.  Isaviruses infect salmon; thogotoviruses infect vertebrates and invertebrates, such as mosquitoes and sea lice.
  • 5. Characteristics Characteristics RNA virus (negative-sense) Pleomorphic virus Spheric or tubular shape 80-120 nm
  • 7. Structure Characteristics Envelope : 2 glycoproteins – hemagglutinin (HA) neuraminidase (NA) Membrane protein M2 Matrix protein M1 A + B viruses – 8 different hellical nucleocaspid segments of RNA C – 7 genomic segments
  • 9. Ag Shifts Characteristics  The HA and NA of influenza A virus can undergo major and minor Ag changes to ensure the presence of immunologically naïve , susceptible people.  Shifts occur only with influenza A virus , and the different HAs are designated H1, H2…H16.  The NA of influenza A also undergoes antigenic shifts.  Mutation-derived changes in HA are responsible for the changes in antigenicity (shifts).  Influenza B virus undergoes only minor antigenic changes .  This process occurs every 2 to 3 years causing local outbreaks of influenza A and B infection.
  • 10. Pathogenesis Pathogenesis Transmission Replication Mechanism of disease
  • 11. Transmission Pathogenesis  Transmission mainly person to person by sneezing , coughing , or simply talking .  Virus likes a cool , less humid atmosphere ( winter heating season ).  Extensively spread by school children .  The respiratory tract is the gate opening of the virus .  Influenza can also be transmitted by saliva, nasal secretions, feces and blood.
  • 13. Replication Pathogenesis  Begins with the binding of HA to sialic acid on cell surface glycoproteins .  The virus is then transferred to an endosome through vesicles .  The nucleocapsid travels to the nucleus , where it is transcribed into messenger RNA.  The transcriptase uses host cell mRNA as a primer for viral mRNA synthesis
  • 14. Replication  The mRNAs are translated into protein in the cytoplasm.  The HA and NA glycoproteins are processed by the endoplasmic reticulum and Golgi apparatus.  The HA and NA are then transported to the cell surface.  The virus buds selectively from the apical (airway) surface of the cell as a result of the preferential insertion of the HA in this membrane.  Virus is released approximately 8 hours after infection. Pathogenesis
  • 16. Pathogenesis The important Products of Influenza Gene Segments Segment Protein Function 4 HA Hemagglutinin, viral attachment protein, fusion protein, target of neutralizing antibody 5 NP Nucleocapsid 6 NA Neuraminidase (cleaves sialic acid and promotes virus release) 7 M1 Matrix protein: viral structural protein (interacts with nucleocapsid and envelope, promotes assembly) M2 Membrane protein (forms membrane channel and target for amantadine, facilitates uncoating and HA production)
  • 17. Pathogenesis Pathogenesis  Incubation period : 1-4 days ( average of 2 days ) .  Adults can be infectious from 1 day before start of symptoms to 5-7 days after illness starts .  More infectious in children .  The main cause of hospitalization is flu .  The symptoms and time course of the disease are determined by the extent of viral and immune killing of epithelial tissue and cytokine action .  Influenza is normally a self-limited disease that rarely involves organs other than the lung .  Repair of the compromised tissue is initiated within 3 to 5 days of the start of symptoms but may take as long as a month or more , especially in elderly people .
  • 19. Pathogenesis Pathogenesis  Influenza initially establishes a local upper respiratory tract infection . To do so, the virus first targets and kills mucus-secreting, ciliated, and other epithelial cells, causing the loss of this primary defense system. NA facilitates the development of the infection by cleaving sialic acid (neuraminic acid) residues of the mucus, thereby providing access to tissue.  Preferential release of the virus at the apical surface of epithelial cells and into the lung promotes cell-to-cell spread and transmission to other hosts. If the virus spreads to the lower respiratory tract, the infection can cause severe desquamation (shedding) of bronchial or alveolar epithelium down to a single-cell basal layer or to the basement membrane.
  • 20. Pathogenesis Pathogenesis (what else does influenza harm)  Influenza infection promotes bacterial adhesion to the epithelial cells .  Pneumonia may result from a viral pathogenesis or from a secondary bacterial infection .  Inflammatory cell response of the mucosal membrane (monocytes, lymphocytes and few neutrophils ) .  Submucosal edema .  Hyaline membrane disease .  Alveolar emphysema .  Necrosis of alveolar walls .
  • 21. Pathogenesis and immunology  Interferon and cytokine responses may be sufficient to control the infection and are responsible for the systemic “flulike” symptoms.  T-cell responses are important for effecting recovery and immunopathogenesis , but Ab including vaccine induced Ab , can prevent disease .  Influenza infection depresses macrophage and T-cell function . Pathogenesis
  • 23. Symptoms F Fever A Aches C Chills T Tiredness S Sudden Onset
  • 24. A brief prodrome of malaise and headache lasting a few hours Onset fever , chills , severe myalgias , loss of apetite , weakness and fatigue , sore throat , nonproductive cough . Recovery within 7 to 10 days Pneumonia , myositis , and Rye syndrome .
  • 25. Epidemiology Nov-April All year April-Nov Epidemiology Influenza Seasonal Risk Areas
  • 26. Epidemiology Epidemiology  Typically, in a year's normal two flu seasons (one per hemisphere), there are between three and five million cases of severe illness and around 500,000 deaths worldwide.  Roughly three times per century, a pandemic occurs, which infects a large proportion of the world's population and can kill tens of millions of people .
  • 27. Diagnosis Diagnosis ,Prevention and Treatment  Based on the characteristic symptoms.  The season , presence of the virus in community .  Cell culture in monkey kidney .  Hemagglutination .  Ab inhibition of hemadsorption .
  • 28. Prevention Vaccine : Diagnosis ,Prevention and Treatment  A shot containing killed virus ( inactivated ) given in the arm normally .  Can be also given as nasal spray . Other :  Keeping good hygiene habits  Covering coughs and sneezes  Staying away of sick people
  • 29. Treatment Diagnosis ,Prevention and Treatment  Acetaminophen , antihistamines and other drugs are used to relieve the symptoms .  Amantadine and rimantadine inhibit an uncoating step of influenza A virus but do not affect the influenza B and C viruses .  Zanamivir and oseltamivir inhibit both A and B as enzyme inhibitor of neuraminidase .
  • 30. Thank you for your attention

Editor's Notes

  1. I had a little bird , its name was enza , I opened the window and influenza
  2. The M1, M2, and NP proteins are type specific and are therefore used to differentiate influenza A from B or C viruses.
  3. Mutation-derived changes in HA are responsible for the minor ("drift") and major ("shift") changes in antigenicity. Shifts occur only with influenza A virus, and the different HAs are designated H1, H2…H16. Mutation-derived changes in HA are responsible for the changes in antigenicity (shifts)
  4. All the proteins are encoded on separate segments, with the exception of the nonstructural proteins (NS1 and NS2) and the M1 and M2 proteins, which are transcribed from one segment each.\ The HA has several functions. It is the viral attachment protein, binding to sialic acid on epithelial cell surface receptors; it promotes fusion of the envelope to the cell membrane at acidic pH; it hemagglutinates (binds and aggregates) human, chicken, and guinea pig red blood cells; and it elicits the protective neutralizing antibody response. Viral replication begins with the binding of HA to sialic acid on cell surface glycoproteins (Figure 57-2). The different HAs (HA1-16) bind to different sialic acid structures. The virus is then internalized into a coated vesicle and transferred to an endosome. Acidification of the endosome causes the HA to bend over and expose hydrophobic fusion-promoting regions of the protein. The viral envelope then fuses with the endosome membrane. The proton channel formed by the M2 protein promotes acidification of the envelope contents to break the interaction between the M1 protein and the NP, allowing uncoating and delivery of the nucleocapsid into the cytoplasm. Unlike most RNA viruses, the influenza nucleocapsid travels to the nucleus, where it is transcribed into messenger RNA (mRNA). The transcriptase (PA, PB1, and PB2) uses host cell mRNA as a primer for viral mRNA synthesis. In so doing, it steals the methylated cap region of the RNA, the sequence required for efficient binding to ribosomes. All the genomic segments are transcribed into 5'-capped, 3'-polyadenylated (polyA) mRNA for individual proteins except the segments for the M1, M2 and NS1, NS2 proteins, which are each differentially spliced (using cellular enzymes) to produce two different mRNAs The mRNAs are translated into protein in the cytoplasm. The HA and NA glycoproteins are processed by the endoplasmic reticulum and Golgi apparatus. The M2 protein inserts into cellular membranes. Its proton channel prevents acidification of Golgi and other vesicles, thus preventing acid-induced folding and inactivation of the HA within the cell. The HA and NA are then transported to the cell surface. Positive-sense RNA templates for each segment are produced, and the negative-sense RNA genome is replicated in the nucleus. The genomic segments associate with polymerase and NP proteins to form nucleocapsids, and the NS2 protein facilitates the transport of ribonucleocapsids into the cytoplasm, where they interact with the M1 protein-lined plasma membrane sections containing M2, HA, and NA. The virus buds selectively from the apical (airway) surface of the cell as a result of the preferential insertion of the HA in this membrane. Virus is released approximately 8 hours after infection.
  5. The mRNAs are translated into protein in the cytoplasm. The HA and NA glycoproteins are processed by the endoplasmic reticulum and Golgi apparatus. The M2 protein inserts into cellular membranes. Its proton channel prevents acidification of Golgi and other vesicles, thus preventing acid-induced folding and inactivation of the HA within the cell. The HA and NA are then transported to the cell surface. Positive-sense RNA templates for each segment are produced, and the negative-sense RNA genome is replicated in the nucleus. The genomic segments associate with polymerase and NP proteins to form nucleocapsids, and the NS2 protein facilitates the transport of ribonucleocapsids into the cytoplasm, where they interact with the M1 protein-lined plasma membrane sections containing M2, HA, and NA. The virus buds selectively from the apical (airway) surface of the cell as a result of the preferential insertion of the HA in this membrane. Virus is released approximately 8 hours after infection.
  6. Pathogenesis and Immunity Influenza initially establishes a local upper respiratory tract infection (Box 57-2). To do so, the virus first targets and kills mucus-secreting, ciliated, and other epithelial cells, causing the loss of this primary defense system. NA facilitates the development of the infection by cleaving sialic acid (neuraminic acid) residues of the mucus, thereby providing access to tissue. Preferential release of the virus at the apical surface of epithelial cells and into the lung promotes cell-to-cell spread and transmission to other hosts. If the virus spreads to the lower respiratory tract, the infection can cause severe desquamation (shedding) of bronchial or alveolar epithelium down to a single-cell basal layer or to the basement membrane. BOX 57-2 Disease Mechanisms of Influenza A and B Viruses Virus can establish infection of the upper and lower respiratory tract. Systemic symptoms are caused by the interferon and cytokine response to the virus. Local symptoms result from epithelial cell damage, including ciliated and mucus-secreting cells. Interferon and cell-mediated immune responses (natural killer and T cells) are important for immune resolution and immunopathogenesis. Infected people are predisposed to bacterial superinfection because of the loss of natural barriers and exposure of binding sites on epithelial cells. Antibody is important for future protection against infection and is specific for defined epitopes on hemagglutinin (HA) and neuraminidase (NA) proteins. The HA and NA of influenza A virus can undergo major (reassortment: shift) and minor (mutation: drift) antigenic changes to ensure the presence of immunologically naïve, susceptible people. Influenza B virus undergoes only minor antigenic changes. In addition to compromising the mucociliary defenses of the respiratory tract, influenza infection promotes bacterial adhesion to the epithelial cells. Pneumonia may result from a viral pathogenesis or from a secondary bacterial infection. Influenza may also cause a transient or low-level viremia but rarely involves tissues other than the lung.Influenza infection leads to an inflammatory cell response of the mucosal membrane, which consists primarily of monocytes and lymphocytes and few neutrophils. Submucosal edema is present. Lung tissue may reveal hyaline membrane disease, alveolar emphysema, and necrosis of the alveolar walls (Figure 57-3).Interferon and cytokine responses, which peak at almost the same time as virus in nasal washes, may be sufficient to control the infection, and are responsible for the systemic "flulike" symptoms. T-cell responses are important for effecting recovery and immunopathogenesis, but antibody, including vaccine-induced antibody, can prevent disease. As for measles, influenza infection depresses macrophage and T-cell function, hindering immune resolution. Of interest, recovery often precedes detection of antibody in serum or secretions.Protection against reinfection is primarily associated with the development of antibodies to HA, but antibodies to NA are also protective. The antibody response is specific for each strain of influenza, but the cell-mediated immune response is more general and is capable of reacting to influenza strains of the same type (influenza A or B virus). Antigenic targets for T-cell responses include peptides from HA but also from the nucleocapsid proteins (NP, PB2) and M1 protein. The NP, PB2, and M1 proteins differ considerably for influenza A and B but minimally between strains of these viruses; hence T-cell memory may provide future protection against infection by different strains of either influenza A or B.
  7. Protection against reinfection is primarily associated with the development of antibodies to HA, but antibodies to NA are also protective. The antibody response is specific for each strain of influenza, but the cell-mediated immune response is more general and is capable of reacting to influenza strains of the same type (influenza A or B virus). Antigenic targets for T-cell responses include peptides from HA but also from the nucleocapsid proteins (NP, PB2) and M1 protein. The NP, PB2, and M1 proteins differ considerably for influenza A and B but minimally between strains of these viruses; hence T-cell memory may provide future protection against infection by different strains of either influenza A or B.